Distribution of confirmed and unconfirmed enterococci isolates of the ISO 7899-2 method in the intestinal enterococci, environmental enterococci, and non-enterococci clades based on the phylogenetic analysis of the partial 16S rRNA sequences
| Site . | Intestinal enterococci . | Environmental enterococci . | Non-enterococci . | Total . | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| E. faecium clade . | E. faecalis clade . | E. avium clade . | E.gallinarum clade . | Other . | Macrococcus spp. and Staphylococcus spp. clade . | Streptococcus spp. and Lactococcus spp. clade . | Lactobacillus spp. and Pediococcus spp. clade . | Leuconostoc spp. clade . | ||
| Number of confirmed isolates | ||||||||||
| A | 12 | 8 | 0 | 2 | 0 | 0 | 0 | 5 | 0 | 27 |
| B | 31 | 6 | 0 | 0 | 0 | 0 | 0 | 7 | 0 | 44 |
| C | 13 | 7 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 20 |
| D | 47 | 22 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 70 |
| E | 2 | 54 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 56 |
| Total (conf.) | 105 | 97 | 0 | 2 | 0 | 0 | 0 | 13 | 0 | 217 |
| Number of unconfirmed isolates | ||||||||||
| A | 1 | 0 | 0 | 3 | 0 | 0 | 11 | 0 | 0 | 15 |
| B | 4 | 2 | 8 | 4 | 10 | 1 | 1 | 4 | 1 | 35 |
| C | 4 | 1 | 2 | 13 | 0 | 7 | 0 | 0 | 0 | 27 |
| D | 10 | 5 | 1 | 20 | 4 | 0 | 2 | 1 | 0 | 43 |
| E | 0 | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 4 |
| Total (unconf.) | 19 | 10 | 11 | 42 | 14 | 8 | 14 | 6 | 1 | 124 |
| Total (all) | 124 | 107 | 11 | 44 | 14 | 8 | 14 | 18 | 1 | 341 |
| Site . | Intestinal enterococci . | Environmental enterococci . | Non-enterococci . | Total . | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| E. faecium clade . | E. faecalis clade . | E. avium clade . | E.gallinarum clade . | Other . | Macrococcus spp. and Staphylococcus spp. clade . | Streptococcus spp. and Lactococcus spp. clade . | Lactobacillus spp. and Pediococcus spp. clade . | Leuconostoc spp. clade . | ||
| Number of confirmed isolates | ||||||||||
| A | 12 | 8 | 0 | 2 | 0 | 0 | 0 | 5 | 0 | 27 |
| B | 31 | 6 | 0 | 0 | 0 | 0 | 0 | 7 | 0 | 44 |
| C | 13 | 7 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 20 |
| D | 47 | 22 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 70 |
| E | 2 | 54 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 56 |
| Total (conf.) | 105 | 97 | 0 | 2 | 0 | 0 | 0 | 13 | 0 | 217 |
| Number of unconfirmed isolates | ||||||||||
| A | 1 | 0 | 0 | 3 | 0 | 0 | 11 | 0 | 0 | 15 |
| B | 4 | 2 | 8 | 4 | 10 | 1 | 1 | 4 | 1 | 35 |
| C | 4 | 1 | 2 | 13 | 0 | 7 | 0 | 0 | 0 | 27 |
| D | 10 | 5 | 1 | 20 | 4 | 0 | 2 | 1 | 0 | 43 |
| E | 0 | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 4 |
| Total (unconf.) | 19 | 10 | 11 | 42 | 14 | 8 | 14 | 6 | 1 | 124 |
| Total (all) | 124 | 107 | 11 | 44 | 14 | 8 | 14 | 18 | 1 | 341 |