Green roofs are a sustainable, low-impact development technique. They can reduce peak stormwater runoff and runoff volume and improve the quality of runoff from individual buildings and developments, which can lower the risk of frequent urban flooding and improve the quality of receiving waters. Few studies have compared different types of green roof models under the same rainfall intensities; thus, in this study, the predictions of a non-linear storage reservoirs model, Storm Water Management Model (SWMM), and a physical process model (HYDRUS-1D) were discussed. Both models were compared against measured data obtained from a series of laboratory experiments, designed to represent different storm categories and rainfall events. It was concluded that the total runoff of the SWMM model is always less than that of HYDRUS-1D. The maximum flowrate of the SWMM model is more than that of HYDRUS-1D during all events.