Recently urban waterlogging problems have become more and more serious, and the construction of airport runway makes the impervious area of the airport high, which leads to the deterioration of the water environment and frequent waterlogging disasters. It is of great significance to design and construct the sponge airport with the low impact development (LID) facilities. In this paper, we are taking a catchment N1 of Beijing Daxing International Airport as a Case Study. The LID facilities are designed and the runoff process of a heavy rainfall in catchment N1 is simulated before and after the implementation of LID facilities. The results show that the total amount of surface runoff, the number of overflow junctions and full-flow conduits of rainwater drainage system in catchment N1 of Beijing Daxing International Airport are significantly reduced after the implementation of the LID facilities. Therefore, the application of LID facilities has greatly improved the ability of the airport to remove rainwater and effectively alleviated the risk of waterlogging in the airport flight area. This study provides theoretical support for airport designers and managers to solve flood control and rainwater drainage problems and has the vital practical significance.